PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g006900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 510aa    MW: 56232.8 Da    PI: 8.557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g006900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-057191323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  Csa17g006900.1 71 CEICGKGFQRDQNLQLHRRGH 91
                    *******************88 PP

2zf-C2H210.90.0015145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C k++  +s+ k H +t+
  Csa17g006900.1 145 WKCEKCAKRYAVQSDWKAHSKTC 167
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-66891No hitNo description
PROSITE profilePS5015711.4896991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-6140165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MTAEDQTISS SRGYVQSSST TDLVDHHHHE HESLNPPLVK KKRNLPGNPD PEAEVIALSP  60
KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY VCPEKSCVHH  120
HPTRALGDLT GIKKHFCRKH GEKKWKCEKC AKRYAVQSDW KAHSKTCGTR EYRCDCGTIF  180
SRRDSFITHR AFCDALAEET ARLNAASHLK SLAATAGSNL NYHYLMGTLI PSPSPQPSPS  240
FPFGPLPSQH HHNHFPITTT TFDHHHQDAM KPASSLSLWM GGNINHHHEQ VNIEDRMAPQ  300
PHSPQEDYNW VFGNANNRGE LITTSDSLIT HENNINIKEN ANAATSLSVP SLFSSVDQIS  360
QDANAATTTA NMSATALLQK AAQMGATSSK PPSTTITTEQ SAFLQSFASK ISDQGQIIED  420
GGSDKFFALF GSNSVGLMSN NNSNNGLHEI GNPRSGVTVV SGIDELQNYS WKRRRVEIGD  480
AGGGGQTRDF LGVGVQQTMC RSSSINGWI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471475KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2278370.0AK227837.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12.
GenBankBT0062090.0BT006209.1 Arabidopsis thaliana At1g03840 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475014.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLR0GWJ50.0R0GWJ5_9BRAS; Uncharacterized protein
STRINGAT1G03840.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein